The Interactive Shell¶
In most of this tutorial, we assume you start the Sage interpreter
using the sage
command. This starts a customized version of the
IPython shell, and imports many functions and classes, so they are
ready to use from the command prompt. Further customization is
possible by editing the $SAGE_ROOT/ipythonrc
file. Upon starting
Sage, you get output similar to the following:

 SAGE Version 3.1.1, Release Date: 20080524 
 Type notebook() for the GUI, and license() for information. 

sage:
To quit Sage either press CtrlD or type
quit
or exit
.
sage: quit
Exiting SAGE (CPU time 0m0.00s, Wall time 0m0.89s)
The wall time is the time that elapsed on the clock hanging from your wall. This is relevant, since CPU time does not track time used by subprocesses like GAP or Singular.
(Avoid killing a Sage process with kill 9
from a terminal,
since Sage might not kill child processes, e.g.,
Maple processes, or cleanup temporary files from
$HOME/.sage/tmp
.)
Your Sage Session¶
The session is the sequence of input and output
from when you start Sage until you quit. Sage logs all Sage input,
via IPython. In fact, if you’re using the interactive shell (not the
notebook interface), then at any point you may type %history
(or %hist
) to
get a listing of all input lines typed so far. You can type ?
at
the Sage prompt to find out more about IPython, e.g.,
“IPython offers numbered prompts ... with input and output
caching. All input is saved and can be retrieved as variables (besides
the usual arrow key recall). The following GLOBAL variables always
exist (so don’t overwrite them!)”:
_: previous input (interactive shell and notebook)
__: next previous input (interactive shell only)
_oh : list of all inputs (interactive shell only)
Here is an example:
sage: factor(100)
_1 = 2^2 * 5^2
sage: kronecker_symbol(3,5)
_2 = 1
sage: %hist #This only works from the interactive shell, not the notebook.
1: factor(100)
2: kronecker_symbol(3,5)
3: %hist
sage: _oh
_4 = {1: 2^2 * 5^2, 2: 1}
sage: _i1
_5 = 'factor(ZZ(100))\n'
sage: eval(_i1)
_6 = 2^2 * 5^2
sage: %hist
1: factor(100)
2: kronecker_symbol(3,5)
3: %hist
4: _oh
5: _i1
6: eval(_i1)
7: %hist
We omit the output numbering in the rest of this tutorial and the other Sage documentation.
You can also store a list of input from session in a macro for that session.
sage: E = EllipticCurve([1,2,3,4,5])
sage: M = ModularSymbols(37)
sage: %hist
1: E = EllipticCurve([1,2,3,4,5])
2: M = ModularSymbols(37)
3: %hist
sage: %macro em 12
Macro `em` created. To execute, type its name (without quotes).
sage: E
Elliptic Curve defined by y^2 + x*y + 3*y = x^3 + 2*x^2 + 4*x + 5 over
Rational Field
sage: E = 5
sage: M = None
sage: em
Executing Macro...
sage: E
Elliptic Curve defined by y^2 + x*y + 3*y = x^3 + 2*x^2 + 4*x + 5 over
Rational Field
When using the interactive shell, any UNIX shell command can be
executed from Sage by prefacing it by an exclamation point !
. For
example,
sage: !ls
auto example.sage glossary.tex t tmp tut.log tut.tex
returns the listing of the current directory.
The PATH
has the Sage bin directory at the front, so if you run gp
,
gap
, singular
, maxima
, etc., you get the versions included
with Sage.
sage: !gp
Reading GPRC: /etc/gprc ...Done.
GP/PARI CALCULATOR Version 2.2.11 (alpha)
i686 running linux (ix86/GMP4.1.4 kernel) 32bit version
...
sage: !singular
SINGULAR / Development
A Computer Algebra System for Polynomial Computations / version 301
0<
by: G.M. Greuel, G. Pfister, H. Schoenemann \ October 2005
FB Mathematik der Universitaet, D67653 Kaiserslautern \
Logging Input and Output¶
Logging your Sage session is not the same as saving it (see
Saving and Loading Complete Sessions for that). To log input (and optionally output) use the
logstart
command. Type logstart?
for more details. You can use
this command to log all input you type, all output, and even play
back that input in a future session (by simply reloading the log
file).
[email protected]:~$ sage

 SAGE Version 3.0.2, Release Date: 20080524 
 Type notebook() for the GUI, and license() for information. 

sage: logstart setup
Activating autologging. Current session state plus future input saved.
Filename : setup
Mode : backup
Output logging : False
Timestamping : False
State : active
sage: E = EllipticCurve([1,2,3,4,5]).minimal_model()
sage: F = QQ^3
sage: x,y = QQ['x,y'].gens()
sage: G = E.gens()
sage:
Exiting SAGE (CPU time 0m0.61s, Wall time 0m50.39s).
[email protected]:~$ sage

 SAGE Version 3.0.2, Release Date: 20080524 
 Type notebook() for the GUI, and license() for information. 

sage: load("setup")
Loading log file <setup> one line at a time...
Finished replaying log file <setup>
sage: E
Elliptic Curve defined by y^2 + x*y = x^3  x^2 + 4*x + 3 over Rational
Field
sage: x*y
x*y
sage: G
[(2 : 3 : 1)]
If you use Sage in the Linux KDE
terminal konsole
then you can save your session as follows: after
starting Sage in konsole
, select “settings”, then “history...”,
then “set unlimited”. When you are ready to save your session,
select “edit” then “save history as...” and type in a name to save
the text of your session to your computer. After saving this file,
you could then load it into an editor, such as xemacs, and print
it.
Paste Ignores Prompts¶
Suppose you are reading a session of Sage or Python computations
and want to copy them into Sage. But there are annoying >>>
or
sage:
prompts to worry about. In fact, you can copy and paste an
example, including the prompts if you want, into Sage. In other
words, by default the Sage parser strips any leading >>>
or
sage:
prompt before passing it to Python. For example,
sage: 2^10
1024
sage: sage: sage: 2^10
1024
sage: >>> 2^10
1024
Timing Commands¶
If you place the %time
command at the beginning of an input line,
the time the command takes to run will be displayed after the
output. For example, we can compare the running time for a certain
exponentiation operation in several ways. The timings below will
probably be much different on your computer, or even between
different versions of Sage. First, native Python:
sage: %time a = int(1938)^int(99484)
CPU times: user 0.66 s, sys: 0.00 s, total: 0.66 s
Wall time: 0.66
This means that 0.66 seconds total were taken, and the “Wall time”, i.e., the amount of time that elapsed on your wall clock, is also 0.66 seconds. If your computer is heavily loaded with other programs, the wall time may be much larger than the CPU time.
It’s also possible to use the timeit
function to try to get
timing over a large number of iterations of a command. This gives
slightly different information, and requires the input of a string
with the command you want to time.
sage: timeit("int(1938)^int(99484)")
5 loops, best of 3: 44.8 ms per loop
Next we time exponentiation using the native Sage Integer type, which is implemented (in Cython) using the GMP library:
sage: %time a = 1938^99484
CPU times: user 0.04 s, sys: 0.00 s, total: 0.04 s
Wall time: 0.04
Using the PARI Clibrary interface:
sage: %time a = pari(1938)^pari(99484)
CPU times: user 0.05 s, sys: 0.00 s, total: 0.05 s
Wall time: 0.05
GMP is better, but only slightly (as expected, since the version of PARI built for Sage uses GMP for integer arithmetic).
You can also time a block of commands using
the cputime
command, as illustrated below:
sage: t = cputime()
sage: a = int(1938)^int(99484)
sage: b = 1938^99484
sage: c = pari(1938)^pari(99484)
sage: cputime(t) # somewhat random output
0.64
sage: cputime?
...
Return the time in CPU second since SAGE started, or with optional
argument t, return the time since time t.
INPUT:
t  (optional) float, time in CPU seconds
OUTPUT:
float  time in CPU seconds
The walltime
command behaves just like the cputime
command,
except that it measures wall time.
We can also compute the above power in some of the computer algebra systems that Sage includes. In each case we execute a trivial command in the system, in order to start up the server for that program. The most relevant time is the wall time. However, if there is a significant difference between the wall time and the CPU time then this may indicate a performance issue worth looking into.
sage: time 1938^99484;
CPU times: user 0.01 s, sys: 0.00 s, total: 0.01 s
Wall time: 0.01
sage: gp(0)
0
sage: time g = gp('1938^99484')
CPU times: user 0.00 s, sys: 0.00 s, total: 0.00 s
Wall time: 0.04
sage: maxima(0)
0
sage: time g = maxima('1938^99484')
CPU times: user 0.00 s, sys: 0.00 s, total: 0.00 s
Wall time: 0.30
sage: kash(0)
0
sage: time g = kash('1938^99484')
CPU times: user 0.00 s, sys: 0.00 s, total: 0.00 s
Wall time: 0.04
sage: mathematica(0)
0
sage: time g = mathematica('1938^99484')
CPU times: user 0.00 s, sys: 0.00 s, total: 0.00 s
Wall time: 0.03
sage: maple(0)
0
sage: time g = maple('1938^99484')
CPU times: user 0.00 s, sys: 0.00 s, total: 0.00 s
Wall time: 0.11
sage: gap(0)
0
sage: time g = gap.eval('1938^99484;;')
CPU times: user 0.00 s, sys: 0.00 s, total: 0.00 s
Wall time: 1.02
Note that GAP and Maxima are the slowest in this test (this was run
on the machine sage.math.washington.edu
). Because of the pexpect
interface overhead, it is perhaps unfair to compare these to Sage,
which is the fastest.
Other IPython tricks¶
As noted above, Sage uses IPython as its front end, and so you can use any of IPython’s commands and features. You can read the full IPython documentation. Meanwhile, here are some fun tricks – these are called “Magic commands” in IPython:
You can use
%bg
to run a command in the background, and then usejobs
to access the results, as follows. (The commentsnot tested
are here because the%bg
syntax doesn’t work well with Sage’s automatic testing facility. If you type this in yourself, it should work as written. This is of course most useful with commands which take a while to complete.)sage: def quick(m): return 2*m sage: %bg quick(20) # not tested Starting job # 0 in a separate thread. sage: jobs.status() # not tested Completed jobs: 0 : quick(20) sage: jobs[0].result # the actual answer, not tested 40
Note that jobs run in the background don’t use the Sage preparser – see The PreParser: Differences between Sage and Python for more information. One (perhaps awkward) way to get around this would be to run
sage: %bg eval(preparse('quick(20)')) # not tested
It is safer and easier, though, to just use
%bg
on commands which don’t require the preparser.You can use
%edit
(or%ed
ored
) to open an editor, if you want to type in some complex code. Before you start Sage, make sure that theEDITOR
environment variable is set to your favorite editor (by puttingexport EDITOR=/usr/bin/emacs
orexport EDITOR=/usr/bin/vim
or something similar in the appropriate place, like a.profile
file). From the Sage prompt, executing%edit
will open up the named editor. Then within the editor you can define a function:def some_function(n): return n**2 + 3*n + 2
Save and quit from the editor. For the rest of your Sage session, you can then use
some_function
. If you want to modify it, type%edit some_function
from the Sage prompt.If you have a computation and you want to modify its output for another use, perform the computation and type
%rep
: this will place the output from the previous command at the Sage prompt, ready for you to edit it.sage: f(x) = cos(x) sage: f(x).derivative(x) sin(x)
At this point, if you type
%rep
at the Sage prompt, you will get a new Sage prompt, followed bysin(x)
, with the cursor at the end of the line.
For more, type %quickref
to get a quick reference guide to
IPython. As of this writing (April 2011), Sage uses version 0.9.1 of
IPython, and the documentation for its magic commands
is available online. Various slightly advanced aspects of magic command system are documented here in IPython.
Errors and Exceptions¶
When something goes wrong, you will usually see a Python
“exception”. Python even tries to suggest what raised the
exception. Often you see the name of the exception, e.g.,
NameError
or ValueError
(see the Python Reference Manual [Py]
for a complete list of exceptions). For example,
sage: 3_2

File "<console>", line 1
ZZ(3)_2
^
SyntaxError: invalid syntax
sage: EllipticCurve([0,infinity])

Traceback (most recent call last):
...
TypeError: Unable to coerce Infinity (<class 'sage...Infinity'>) to Rational
The interactive debugger is sometimes useful for understanding what
went wrong. You can toggle it on or off using %pdb
(the
default is off). The prompt ipdb>
appears if an exception is
raised and the debugger is on. From within the debugger, you can
print the state of any local variable, and move up and down the
execution stack. For example,
sage: %pdb
Automatic pdb calling has been turned ON
sage: EllipticCurve([1,infinity])

<type 'exceptions.TypeError'> Traceback (most recent call last)
...
ipdb>
For a list of commands in the debugger, type ?
at the ipdb>
prompt:
ipdb> ?
Documented commands (type help <topic>):
========================================
EOF break commands debug h l pdef quit tbreak
a bt condition disable help list pdoc r u
alias c cont down ignore n pinfo return unalias
args cl continue enable j next pp s up
b clear d exit jump p q step w
whatis where
Miscellaneous help topics:
==========================
exec pdb
Undocumented commands:
======================
retval rv
Type CtrlD or quit
to return to Sage.
Reverse Search and Tab Completion¶
Reverse search:
Type the beginning of a command, then Ctrlp
(or just hit the up
arrow key) to go back to each line you have entered that begins in
that way. This works even if you completely exit Sage and restart
later. You can also do a reverse search through the history using
Ctrlr
. All these features use the readline
package, which is
available on most flavors of Linux.
To illustrate tab completion, first create the three dimensional vector space \(V=\QQ^3\) as follows:
sage: V = VectorSpace(QQ,3)
sage: V
Vector space of dimension 3 over Rational Field
You can also use the following more concise notation:
sage: V = QQ^3
Then it is easy to list all member functions for \(V\) using tab
completion. Just type V.
, then type the [tab key]
key on your
keyboard:
sage: V.[tab key]
V._VectorSpace_generic__base_field
...
V.ambient_space
V.base_field
V.base_ring
V.basis
V.coordinates
...
V.zero_vector
If you type the first few letters of a function, then [tab key]
,
you get only functions that begin as indicated.
sage: V.i[tab key]
V.is_ambient V.is_dense V.is_full V.is_sparse
If you wonder what a particular function does, e.g., the
coordinates function, type V.coordinates?
for help or
V.coordinates??
for the source code, as explained in the next
section.
Integrated Help System¶
Sage features an integrated help facility. Type a function name followed by ? for the documentation for that function.
sage: V = QQ^3
sage: V.coordinates?
Type: instancemethod
Base Class: <type 'instancemethod'>
String Form: <bound method FreeModule_ambient_field.coordinates of Vector
space of dimension 3 over Rational Field>
Namespace: Interactive
File: /home/was/s/local/lib/python2.4/sitepackages/sage/modules/f
ree_module.py
Definition: V.coordinates(self, v)
Docstring:
Write v in terms of the basis for self.
Returns a list c such that if B is the basis for self, then
sum c_i B_i = v.
If v is not in self, raises an ArithmeticError exception.
EXAMPLES:
sage: M = FreeModule(IntegerRing(), 2); M0,M1=M.gens()
sage: W = M.submodule([M0 + M1, M0  2*M1])
sage: W.coordinates(2*M0M1)
[2, 1]
As shown above, the output tells you the type of the object, the file in which it is defined, and a useful description of the function with examples that you can paste into your current session. Almost all of these examples are regularly automatically tested to make sure they work and behave exactly as claimed.
Another feature that is very much in the spirit of the open source
nature of Sage is that if f
is a Python function, then typing f??
displays the source code that defines f
. For example,
sage: V = QQ^3
sage: V.coordinates??
Type: instancemethod
...
Source:
def coordinates(self, v):
"""
Write $v$ in terms of the basis for self.
...
"""
return self.coordinate_vector(v).list()
This tells us that all the coordinates
function does is call the
coordinate_vector
function and change the result into a list.
What does the coordinate_vector
function do?
sage: V = QQ^3
sage: V.coordinate_vector??
...
def coordinate_vector(self, v):
...
return self.ambient_vector_space()(v)
The coordinate_vector
function coerces its input into the
ambient space, which has the effect of computing the vector of
coefficients of \(v\) in terms of \(V\). The space
\(V\) is already ambient since it’s just \(\QQ^3\).
There is also a coordinate_vector
function for subspaces, and
it’s different. We create a subspace and see:
sage: V = QQ^3; W = V.span_of_basis([V.0, V.1])
sage: W.coordinate_vector??
...
def coordinate_vector(self, v):
"""
...
"""
# First find the coordinates of v wrt echelon basis.
w = self.echelon_coordinate_vector(v)
# Next use transformation matrix from echelon basis to
# user basis.
T = self.echelon_to_user_matrix()
return T.linear_combination_of_rows(w)
(If you think the implementation is inefficient, please sign up to help optimize linear algebra.)
You may also type help(command_name)
or help(class)
for a
manpagelike help file about a given class.
sage: help(VectorSpace)
Help on class VectorSpace ...
class VectorSpace(__builtin__.object)
 Create a Vector Space.

 To create an ambient space over a field with given dimension
 using the calling syntax ...
:
:
When you type q
to exit the help system, your session appears
just as it was. The help listing does not clutter up your session,
unlike the output of function_name?
sometimes does. It’s
particularly helpful to type help(module_name)
. For example,
vector spaces are defined in sage.modules.free_module
, so type
help(sage.modules.free_module)
for documentation about that
whole module. When viewing documentation using help, you can search
by typing /
and in reverse by typing ?
.
Saving and Loading Individual Objects¶
Suppose you compute a matrix or worse, a complicated space of modular symbols, and would like to save it for later use. What can you do? There are several approaches that computer algebra systems take to saving individual objects.
 Save your Game: Only support saving and loading of complete sessions (e.g., GAP, Magma).
 Unified Input/Output: Make every object print in a way that can be read back in (GP/PARI).
 Eval: Make it easy to evaluate arbitrary code in the interpreter (e.g., Singular, PARI).
Because Sage uses Python, it takes a different approach, which is that every object can be serialized, i.e., turned into a string from which that object can be recovered. This is in spirit similar to the unified I/O approach of PARI, except it doesn’t have the drawback that objects print to screen in too complicated of a way. Also, support for saving and loading is (in most cases) completely automatic, requiring no extra programming; it’s simply a feature of Python that was designed into the language from the ground up.
Almost all Sage objects x can be saved in compressed form to disk using
save(x, filename)
(or in many cases x.save(filename)
). To load
the object back in, use load(filename)
.
sage: A = MatrixSpace(QQ,3)(range(9))^2
sage: A
[ 15 18 21]
[ 42 54 66]
[ 69 90 111]
sage: save(A, 'A')
You should now quit Sage and restart. Then you can get A
back:
sage: A = load('A')
sage: A
[ 15 18 21]
[ 42 54 66]
[ 69 90 111]
You can do the same with more complicated objects, e.g., elliptic curves. All data about the object that is cached is stored with the object. For example,
sage: E = EllipticCurve('11a')
sage: v = E.anlist(100000) # takes a while
sage: save(E, 'E')
sage: quit
The saved version of E
takes 153 kilobytes, since it stores the
first 100000 \(a_n\) with it.
~/tmp$ ls l E.sobj
rwrr 1 was was 153500 20060128 19:23 E.sobj
~/tmp$ sage [...]
sage: E = load('E')
sage: v = E.anlist(100000) # instant!
(In Python, saving and loading is accomplished using
the cPickle
module. In particular, a Sage object x
can be saved via cPickle.dumps(x, 2)
. Note the 2
!)
Sage cannot save and load individual objects created in some other computer algebra systems, e.g., GAP, Singular, Maxima, etc. They reload in a state marked “invalid”. In GAP, though many objects print in a form from which they can be reconstructed, many don’t, so reconstructing from their print representation is purposely not allowed.
sage: a = gap(2)
sage: a.save('a')
sage: load('a')
Traceback (most recent call last):
...
ValueError: The session in which this object was defined is no longer
running.
GP/PARI objects can be saved and loaded since their print representation is enough to reconstruct them.
sage: a = gp(2)
sage: a.save('a')
sage: load('a')
2
Saved objects can be reloaded later on computers with different
architectures or operating systems, e.g., you could save a huge
matrix on 32bit OS X and reload it on 64bit Linux, find the
echelon form, then move it back. Also, in many cases you can even
load objects into versions of Sage that are different than the versions
they were saved in, as long as the code for that object isn’t too
different. All the attributes of the objects are saved, along with
the class (but not source code) that defines the object. If that
class no longer exists in a new version of Sage, then the object can’t be
reloaded in that newer version. But you could load it in an old
version, get the objects dictionary (with x.__dict__
), and
save the dictionary, and load that into the newer version.
Saving as Text¶
You can also save the ASCII text representation of objects to a plain text file by simply opening a file in write mode and writing the string representation of the object (you can write many objects this way as well). When you’re done writing objects, close the file.
sage: R.<x,y> = PolynomialRing(QQ,2)
sage: f = (x+y)^7
sage: o = open('file.txt','w')
sage: o.write(str(f))
sage: o.close()
Saving and Loading Complete Sessions¶
Sage has very flexible support for saving and loading complete sessions.
The command save_session(sessionname)
saves all the variables
you’ve defined in the current session as a dictionary in the given
sessionname
. (In the rare case when a variable does not support
saving, it is simply not saved to the dictionary.) The resulting
file is an .sobj
file and can be loaded just like any other
object that was saved. When you load the objects saved in a
session, you get a dictionary whose keys are the variables names
and whose values are the objects.
You can use the load_session(sessionname)
command to load the
variables defined in sessionname
into the current session. Note
that this does not wipe out variables you’ve already defined in
your current session; instead, the two sessions are merged.
First we start Sage and define some variables.
sage: E = EllipticCurve('11a')
sage: M = ModularSymbols(37)
sage: a = 389
sage: t = M.T(2003).matrix(); t.charpoly().factor()
_4 = (x  2004) * (x  12)^2 * (x + 54)^2
Next we save our session, which saves each of the above variables into a file. Then we view the file, which is about 3K in size.
sage: save_session('misc')
Saving a
Saving M
Saving t
Saving E
sage: quit
[email protected]:~/tmp$ ls l misc.sobj
rwrr 1 was was 2979 20060128 19:47 misc.sobj
Finally we restart Sage, define an extra variable, and load our saved session.
sage: b = 19
sage: load_session('misc')
Loading a
Loading M
Loading E
Loading t
Each saved variable is again available. Moreover, the variable
b
was not overwritten.
sage: M
Full Modular Symbols space for Gamma_0(37) of weight 2 with sign 0
and dimension 5 over Rational Field
sage: E
Elliptic Curve defined by y^2 + y = x^3  x^2  10*x  20 over Rational
Field
sage: b
19
sage: a
389
The Notebook Interface¶
The Sage notebook is run by typing
sage: notebook()
on the command line of Sage. This starts the Sage notebook and
opens your default web browser to view it. The server’s state files
are stored in $HOME/.sage/sage\_notebook
.
Other options include:
sage: notebook("directory")
which starts a new notebook server using files in the given
directory, instead of the default directory
$HOME/.sage/sage_notebook
. This can be useful if you want to
have a collection of worksheets associated with a specific project,
or run several separate notebook servers at the same time.
When you start the notebook, it first creates the following files
in $HOME/.sage/sage_notebook
:
nb.sobj (the notebook SAGE object file)
objects/ (a directory containing SAGE objects)
worksheets/ (a directory containing SAGE worksheets).
After creating the above files, the notebook starts a web server.
A “notebook” is a collection of user accounts, each of which can
have any number of worksheets. When you create a new worksheet, the
data that defines it is stored in the worksheets/username/number
directories. In each such directory there is a plain text file
worksheet.txt
 if anything ever happens to your worksheets, or Sage,
or whatever, that humanreadable file contains everything needed to
reconstruct your worksheet.
From within Sage, type notebook?
for much more about how to start a
notebook server.
The following diagram illustrates the architecture of the Sage Notebook:

 
 
 firefox/safari 
 
 javascript 
 program 
 
 

 ^
 AJAX 
V 

 
 sage  SAGE process 1
 web  > SAGE process 2 (Python processes)
 server  pexpect SAGE process 3
  .
  .
 .
For help on a Sage command, cmd
, in the notebook browser box,
type cmd?
and now hit <esc>
(not <shiftenter>
).
For help on the keyboard shortcuts available in the notebook
interface, click on the Help
link.