Parallel computations using RecursivelyEnumeratedSet and Map-Reduce¶
There is an efficient way to distribute computations on a set
\(S\) of objects defined by RecursivelyEnumeratedSet()
(see sage.sets.recursively_enumerated_set
for more details)
over which one would like to perform the following kind of operations:
Compute the cardinality of a (very large) set defined recursively (through a call to
RecursivelyEnumeratedSet_forest
)More generally, compute any kind of generating series over this set
Test a conjecture, e.g. find an element of \(S\) satisfying a specific property, or check that none does or that they all do
Count/list the elements of \(S\) that have a specific property
Apply any map/reduce kind of operation over the elements of \(S\)
AUTHORS:
Florent Hivert – code, documentation (2012–2016)
Jean Baptiste Priez – prototype, debugging help on MacOSX (2011-June, 2016)
Nathann Cohen – some documentation (2012)
Contents¶
How is this different from usual MapReduce?¶
This implementation is specific to RecursivelyEnumeratedSet_forest
, and uses its
properties to do its job. Not only mapping and reducing but also
generating the elements of \(S\) is done on different processors.
How can I use all that stuff?¶
First, you need to set the environment variable SAGE_NUM_THREADS
to the
desired number of parallel threads to be used:
sage: import os # not tested
sage: os.environ["SAGE_NUM_THREADS"] = '8' # not tested
Second, you need the information necessary to describe a
RecursivelyEnumeratedSet_forest
representing your set \(S\) (see
sage.sets.recursively_enumerated_set
). Then, you need to provide a
“map” function as well as a “reduce” function. Here are some examples:
Counting the number of elements. In this situation, the map function can be set to
lambda x: 1
, and the reduce function just adds the values together, i.e.lambda x, y: x + y
.We count binary words of length \(\leq 16\):
sage: seeds = [[]] sage: succ = lambda l: [l + [0], l + [1]] if len(l) < 16 else [] sage: S = RecursivelyEnumeratedSet(seeds, succ, ....: structure='forest', enumeration='depth') sage: map_function = lambda x: 1 sage: reduce_function = lambda x, y: x + y sage: reduce_init = 0 sage: S.map_reduce(map_function, reduce_function, reduce_init) 131071
This matches the number of binary words of length \(\leq 16\):
sage: factor(131071 + 1) 2^17
Note that the map and reduce functions here have the default values of the
sage.sets.recursively_enumerated_set.RecursivelyEnumeratedSet_forest.map_reduce()
method so that the number of elements can be obtained more simply with:sage: S.map_reduce() 131071
Instead of using
RecursivelyEnumeratedSet()
, one can directly useRESetMapReduce
, which gives finer control over the parallel execution (see Advanced use below):sage: from sage.parallel.map_reduce import RESetMapReduce sage: S = RESetMapReduce( ....: roots=[[]], ....: children=lambda l: [l + [0], l + [1]] if len(l) < 16 else [], ....: map_function=lambda x: 1, ....: reduce_function=lambda x, y: x + y, ....: reduce_init=0) sage: S.run() 131071
Generating series. For this, take a Map function that associates a monomial to each element of \(S\), while the Reduce function is still equal to
lambda x, y: x + y
.We compute the generating series for counting binary words of each length \(\leq 16\):
sage: S = RecursivelyEnumeratedSet( ....: [[]], lambda l: [l + [0], l + [1]] if len(l) < 16 else [], ....: structure='forest', enumeration='depth') sage: x = polygen(ZZ) sage: sp = S.map_reduce( ....: map_function=lambda z: x**len(z), ....: reduce_function=lambda x, y: x + y, ....: reduce_init=0) sage: sp 65536*x^16 + 32768*x^15 + 16384*x^14 + 8192*x^13 + 4096*x^12 + 2048*x^11 + 1024*x^10 + 512*x^9 + 256*x^8 + 128*x^7 + 64*x^6 + 32*x^5 + 16*x^4 + 8*x^3 + 4*x^2 + 2*x + 1
This is of course \(\sum_{i=0}^{16} (2x)^i\):
sage: sp == sum((2*x)^i for i in range(17)) True
Here is another example where we count permutations of size \(\leq 8\) (here we use the default values):
sage: S = RecursivelyEnumeratedSet( ....: [[]], ....: lambda l: ([l[:i] + [len(l)] + l[i:] ....: for i in range(len(l) + 1)] if len(l) < 8 else []), ....: structure='forest', ....: enumeration='depth') sage: x = polygen(ZZ) sage: sp = S.map_reduce(lambda z: x**len(z)); sp 40320*x^8 + 5040*x^7 + 720*x^6 + 120*x^5 + 24*x^4 + 6*x^3 + 2*x^2 + x + 1
This is of course \(\sum_{i=0}^{8} i! x^i\):
sage: sp == sum(factorial(i)*x^i for i in range(9)) True
Post Processing. We now demonstrate the use of
post_process
. We generate the permutation as previously, but we only perform the map/reduce computation on those of evenlen
. Of course we get the even part of the previous generating series:sage: S = RecursivelyEnumeratedSet( ....: [[]], ....: lambda l: ([l[:i] + [len(l) + 1] + l[i:] ....: for i in range(len(l) + 1)] if len(l) < 8 else []), ....: post_process=lambda l: l if len(l) % 2 == 0 else None, ....: structure='forest', ....: enumeration='depth') sage: sp = S.map_reduce(lambda z: x**len(z)); sp 40320*x^8 + 720*x^6 + 24*x^4 + 2*x^2 + 1
This is also useful for example to call a constructor on the generated elements:
sage: S = RecursivelyEnumeratedSet( ....: [[]], ....: lambda l: ([l[:i] + [len(l) + 1] + l[i:] ....: for i in range(len(l) + 1)] if len(l) < 5 else []), ....: post_process=lambda l: Permutation(l) if len(l) == 5 else None, ....: structure='forest', ....: enumeration='depth') sage: x = polygen(ZZ) sage: sp = S.map_reduce(lambda z: x**z.number_of_inversions()); sp x^10 + 4*x^9 + 9*x^8 + 15*x^7 + 20*x^6 + 22*x^5 + 20*x^4 + 15*x^3 + 9*x^2 + 4*x + 1
We get here a polynomial which is the \(q\)-factorial (in the variable \(x\)) of \(5\), that is, \(\prod_{i=1}^{5} \frac{1-x^i}{1-x}\):
sage: x = polygen(ZZ) sage: prod((1-x^i)//(1-x) for i in range(1, 6)) x^10 + 4*x^9 + 9*x^8 + 15*x^7 + 20*x^6 + 22*x^5 + 20*x^4 + 15*x^3 + 9*x^2 + 4*x + 1
Compare:
sage: from sage.combinat.q_analogues import q_factorial sage: q_factorial(5) q^10 + 4*q^9 + 9*q^8 + 15*q^7 + 20*q^6 + 22*q^5 + 20*q^4 + 15*q^3 + 9*q^2 + 4*q + 1
Listing the objects. One can also compute the list of objects in a
RecursivelyEnumeratedSet_forest>
usingRESetMapReduce
. As an example, we compute the set of numbers between 1 and 63, generated by their binary expansion:sage: S = RecursivelyEnumeratedSet( ....: [1], ....: lambda l: [(l<<1)|0, (l<<1)|1] if l < 1<<5 else [], ....: structure='forest', ....: enumeration='depth')
Here is the list computed without
RESetMapReduce
:sage: serial = list(S) sage: serial [1, 2, 4, 8, 16, 32, 33, 17, 34, 35, 9, 18, 36, 37, 19, 38, 39, 5, 10, 20, 40, 41, 21, 42, 43, 11, 22, 44, 45, 23, 46, 47, 3, 6, 12, 24, 48, 49, 25, 50, 51, 13, 26, 52, 53, 27, 54, 55, 7, 14, 28, 56, 57, 29, 58, 59, 15, 30, 60, 61, 31, 62, 63]
Here is how to perform the parallel computation. The order of the lists depends on the synchronisation of the various computation processes and therefore should be considered as random:
sage: parall = S.map_reduce(lambda x: [x], lambda x, y: x + y, []) sage: parall # random [1, 3, 7, 15, 31, 63, 62, 30, 61, 60, 14, 29, 59, 58, 28, 57, 56, 6, 13, 27, 55, 54, 26, 53, 52, 12, 25, 51, 50, 24, 49, 48, 2, 5, 11, 23, 47, 46, 22, 45, 44, 10, 21, 43, 42, 20, 41, 40, 4, 9, 19, 39, 38, 18, 37, 36, 8, 17, 35, 34, 16, 33, 32] sage: sorted(serial) == sorted(parall) True
Advanced use¶
Fine control over the execution of a map/reduce computation is achieved
via parameters passed to the RESetMapReduce.run()
method.
The following three parameters can be used:
max_proc
– (integer, default:None
) if given, the maximum number of worker processors to use. The actual number is also bounded by the value of the environment variableSAGE_NUM_THREADS
(the number of cores by default).timeout
– a timeout on the computation (default:None
)reduce_locally
– whether the workers should reduce locally their work or sends results to the master as soon as possible. SeeRESetMapReduceWorker
for details.
Here is an example or how to deal with timeout:
sage: from sage.parallel.map_reduce import (RESetMPExample, AbortError)
sage: EX = RESetMPExample(maxl=100)
sage: try:
....: res = EX.run(timeout=float(0.01))
....: except AbortError:
....: print("Computation timeout")
....: else:
....: print("Computation normally finished")
....: res
Computation timeout
The following should not timeout even on a very slow machine:
sage: EX = RESetMPExample(maxl=8)
sage: try:
....: res = EX.run(timeout=60)
....: except AbortError:
....: print("Computation Timeout")
....: else:
....: print("Computation normally finished")
....: res
Computation normally finished
40320*x^8 + 5040*x^7 + 720*x^6 + 120*x^5 + 24*x^4 + 6*x^3 + 2*x^2 + x + 1
As for reduce_locally
, one should not see any difference, except for speed
during normal usage. Most of the time one should leave it set to True
,
unless one sets up a mechanism to consume the partial results as soon as they
arrive. See RESetParallelIterator
and in particular the __iter__
method for a example of consumer use.
Profiling¶
It is possible to profile a map/reduce computation. First we create a
RESetMapReduce
object:
sage: from sage.parallel.map_reduce import RESetMapReduce
sage: S = RESetMapReduce(
....: roots=[[]],
....: children=lambda l: [l + [0], l + [1]] if len(l) < 16 else [],
....: map_function=lambda x: 1,
....: reduce_function=lambda x, y: x + y,
....: reduce_init=0)
The profiling is activated by the profile
parameter. The value provided
should be a prefix (including a possible directory) for the profile dump:
sage: prof = tmp_dir('RESetMR_profile') + 'profcomp'
sage: res = S.run(profile=prof) # random
[RESetMapReduceWorker-1:58] (20:00:41.444) Profiling in
/home/user/.sage/temp/.../32414/RESetMR_profilewRCRAx/profcomp1
...
[RESetMapReduceWorker-1:57] (20:00:41.444) Profiling in
/home/user/.sage/temp/.../32414/RESetMR_profilewRCRAx/profcomp0
...
sage: res
131071
In this example, the profiles have been dumped in files such as
profcomp0
. One can then load and print them as follows. See
cProfile.Profile
for more details:
sage: import cProfile, pstats
sage: st = pstats.Stats(prof+'0')
sage: st.strip_dirs().sort_stats('cumulative').print_stats() # random
...
Ordered by: cumulative time
ncalls tottime percall cumtime percall filename:lineno(function)
1 0.023 0.023 0.432 0.432 map_reduce.py:1211(run_myself)
11968 0.151 0.000 0.223 0.000 map_reduce.py:1292(walk_branch_locally)
...
<pstats.Stats instance at 0x7fedea40c6c8>
See also
The Python Profilers for more detail on profiling in python.
Logging¶
The computation progress is logged through a logging.Logger
in
sage.parallel.map_reduce.logger
together with logging.StreamHandler
and a logging.Formatter
. They are currently configured to print
warning messages to the console.
See also
Logging facility for Python for more detail on logging and log system configuration.
Note
Calls to logger which involve printing the node are commented out in the code, because the printing (to a string) of the node can be very time consuming depending on the node and it happens before the decision whether the logger should record the string or drop it.
How does it work ?¶
The scheduling algorithm we use here is any adaptation of Wikipedia article Work_stealing:
In a work stealing scheduler, each processor in a computer system has a queue of work items (computational tasks, threads) to perform. […]. Each work items are initially put on the queue of the processor executing the work item. When a processor runs out of work, it looks at the queues of other processors and “steals” their work items. In effect, work stealing distributes the scheduling work over idle processors, and as long as all processors have work to do, no scheduling overhead occurs.
For communication we use Python’s basic multiprocessing
module. We
first describe the different actors and communication tools used by the
system. The work is done under the coordination of a master object (an
instance of RESetMapReduce
) by a bunch of worker objects
(instances of RESetMapReduceWorker
).
Each running map reduce instance works on a RecursivelyEnumeratedSet_forest>
called here \(C\) and is
coordinated by a RESetMapReduce
object called the master. The
master is in charge of launching the work, gathering the results and cleaning
up at the end of the computation. It doesn’t perform any computation
associated to the generation of the element \(C\) nor the computation of the
mapped function. It however occasionally perform a reduce, but most reducing
is by default done by the workers. Also thanks to the work-stealing algorithm,
the master is only involved in detecting the termination of the computation
but all the load balancing is done at the level of the workers.
Workers are instances of RESetMapReduceWorker
. They are responsible
for doing the actual computations: element generation, mapping and reducing.
They are also responsible for the load balancing thanks to work-stealing.
Here is a description of the attributes of the master relevant to the map-reduce protocol:
_results
– aSimpleQueue
where the master gathers the results sent by the workers._active_tasks
– aSemaphore
recording the number of active tasks. The work is complete when it reaches 0._done
– aLock
which ensures that shutdown is done only once._aborted
– aValue()
storing a sharedctypes.c_bool
which isTrue
if the computation was aborted before all workers ran out of work._workers
– a list ofRESetMapReduceWorker
objects. Each worker is identified by its position in this list.
Each worker is a process (RESetMapReduceWorker
inherits from
Process
) which contains:
worker._iproc
– the identifier of the worker that is its position in the master’s list of workersworker._todo
– acollections.deque
storing of nodes of the worker. It is used as a stack by the worker. Thiefs steal from the bottom of this queue.worker._request
– aSimpleQueue
storing steal request submitted toworker
.worker._read_task
,worker._write_task
– aPipe
used to transfert node during steal.worker._thief
– aThread
which is in charge of stealing fromworker._todo
.
Here is a schematic of the architecture:
How thefts are performed¶
During normal time, that is, when all workers are active, a worker W
is
iterating though a loop inside
RESetMapReduceWorker.walk_branch_locally()
. Work nodes are taken from
and new nodes W._todo
are appended to W._todo
. When a worker W
runs out of work, that is, when worker._todo
is empty, it tries to steal
some work (i.e., a node) from another worker. This is performed in the
RESetMapReduceWorker.steal()
method.
From the point of view of W
, here is what happens:
W
signals to the master that it is idle:master._signal_task_done
;W
chooses a victimV
at random;W
sends a request toV
: it puts its identifier intoV._request
;W
tries to read a node fromW._read_task
. Then three things may happen:a proper node is read. Then the theft was a success and
W
starts working locally on the received node.None
is received. This means thatV
was idle. ThenW
tries another victim.AbortError
is received. This means either that the computation was aborted or that it simply succeeded and that no more work is required byW
. Therefore anAbortError
exception is raised leadingW
to shutdown.
We now describe the protocol on the victim’s side. Each worker process contains
a Thread
which we call T
for thief which acts like some kind of
Troyan horse during theft. It is normally blocked waiting for a steal request.
From the point of view of V
and T
, here is what happens:
during normal time,
T
is blocked waiting onV._request
;upon steal request,
T
wakes up receiving the identification ofW
;T
signals to the master that a new task is starting bymaster._signal_task_start
;Two things may happen depending if the queue
V._todo
is empty or not. Remark that due to the GIL, there is no parallel execution between the victimV
and its thief threadT
.If
V._todo
is empty, thenNone
is answered onW._write_task
. The task is immediately signaled to end the master throughmaster._signal_task_done
.Otherwise, a node is removed from the bottom of
V._todo
. The node is sent toW
onW._write_task
. The task will be ended byW
, that is, when finished working on the subtree rooted at the node,W
will callmaster._signal_task_done
.
The end of the computation¶
To detect when a computation is finished, a synchronized integer is kept which
counts the number of active tasks. This is essentially a semaphore but
semaphores are broken on Darwin OSes so we ship two implementations depending
on the OS (see ActiveTaskCounter
and ActiveTaskCounterDarwin
and the note below).
When a worker finishes working on a task, it calls
master._signal_task_done
. This decreases the task counter
master._active_tasks
. When it reaches 0, it means that there are no more
nodes: the work is completed. The worker executes master._shutdown
which sends AbortError
to all worker._request
and
worker._write_task
queues. Each worker or thief thread receiving such
a message raises the corresponding exception, therefore stopping its work. A
lock called master._done
ensures that shutdown is only done once.
Finally, it is also possible to interrupt the computation before its ends,
by calling master.abort()
. This is achieved by setting
master._active_tasks
to 0 and calling master._shutdown
.
Warning
The macOS Semaphore bug
Darwin OSes do not correctly implement POSIX’s semaphore semantic. Indeed, on these systems, acquire may fail and return False not only when the semaphore is equal to zero but also because someone else is trying to acquire at the same time. This makes using Semaphores impossible on macOS so that on these systems we use a synchronized integer instead.
Are there examples of classes?¶
Yes! Here they are:
RESetMPExample
– a simple basic exampleRESetParallelIterator
– a more advanced example using non standard communication configuration.
Tests¶
Generating series for the sum of strictly decreasing lists of integers smaller than 15:
sage: y = polygen(ZZ, 'y')
sage: R = RESetMapReduce(
....: roots=[([], 0, 0)] + [([i], i, i) for i in range(1, 15)],
....: children=lambda list_sum_last:
....: [(list_sum_last[0] + [i], list_sum_last[1] + i, i)
....: for i in range(1, list_sum_last[2])],
....: map_function=lambda li_sum_dummy: y**li_sum_dummy[1])
sage: sg = R.run()
sage: sg == prod((1 + y**i) for i in range(1, 15))
True
Classes and methods¶
- exception sage.parallel.map_reduce.AbortError¶
Bases:
Exception
Exception for aborting parallel computations.
This is used both as exception or as abort message.
- sage.parallel.map_reduce.ActiveTaskCounter¶
- class sage.parallel.map_reduce.ActiveTaskCounterDarwin(task_number)¶
Bases:
object
Handling the number of active tasks.
A class for handling the number of active tasks in a distributed computation process. This is essentially a semaphore, but Darwin OSes do not correctly implement POSIX’s semaphore semantic. So we use a shared integer with a lock.
- abort()¶
Set the task counter to zero.
EXAMPLES:
sage: from sage.parallel.map_reduce import ActiveTaskCounterDarwin as ATC sage: c = ATC(4); c ActiveTaskCounter(value=4) sage: c.abort() sage: c ActiveTaskCounter(value=0)
- task_done()¶
Decrement the task counter by one.
OUTPUT:
Calling
task_done()
decrements the counter and returns its new value.EXAMPLES:
sage: from sage.parallel.map_reduce import ActiveTaskCounterDarwin as ATC sage: c = ATC(4); c ActiveTaskCounter(value=4) sage: c.task_done() 3 sage: c ActiveTaskCounter(value=3) sage: c = ATC(0) sage: c.task_done() -1
- task_start()¶
Increment the task counter by one.
OUTPUT:
Calling
task_start()
on a zero or negative counter returns 0, otherwise increment the counter and returns its value after the incrementation.EXAMPLES:
sage: from sage.parallel.map_reduce import ActiveTaskCounterDarwin as ATC sage: c = ATC(4); c ActiveTaskCounter(value=4) sage: c.task_start() 5 sage: c ActiveTaskCounter(value=5)
Calling
task_start()
on a zero counter does nothing:sage: c = ATC(0) sage: c.task_start() 0 sage: c ActiveTaskCounter(value=0)
- class sage.parallel.map_reduce.ActiveTaskCounterPosix(task_number)¶
Bases:
object
Handling the number of active tasks.
A class for handling the number of active tasks in a distributed computation process. This is the standard implementation on POSIX compliant OSes. We essentially wrap a semaphore.
Note
A legitimate question is whether there is a need in keeping the two implementations. I ran the following experiment on my machine:
S = RecursivelyEnumeratedSet( [[]], lambda l: ([l[:i] + [len(l)] + l[i:] for i in range(len(l) + 1)] if len(l) < NNN else []), structure='forest', enumeration='depth') %time sp = S.map_reduce(lambda z: x**len(z)); sp
For NNN = 10, averaging a dozen of runs, I got:
Posix compliant implementation: 17.04 s
Darwin implementation: 18.26 s
So there is a non negligible overhead. It will probably be worth it if we try to cythonize the code. So I’m keeping both implementations.
- abort()¶
Set the task counter to zero.
EXAMPLES:
sage: from sage.parallel.map_reduce import ActiveTaskCounter as ATC sage: c = ATC(4); c ActiveTaskCounter(value=4) sage: c.abort() sage: c ActiveTaskCounter(value=0)
- task_done()¶
Decrement the task counter by one.
OUTPUT:
Calling
task_done()
decrements the counter and returns its new value.EXAMPLES:
sage: from sage.parallel.map_reduce import ActiveTaskCounter as ATC sage: c = ATC(4); c ActiveTaskCounter(value=4) sage: c.task_done() 3 sage: c ActiveTaskCounter(value=3) sage: c = ATC(0) sage: c.task_done() -1
- task_start()¶
Increment the task counter by one.
OUTPUT:
Calling
task_start()
on a zero or negative counter returns 0, otherwise increment the counter and returns its value after the incrementation.EXAMPLES:
sage: from sage.parallel.map_reduce import ActiveTaskCounterDarwin as ATC sage: c = ATC(4); c ActiveTaskCounter(value=4) sage: c.task_start() 5 sage: c ActiveTaskCounter(value=5)
Calling
task_start()
on a zero counter does nothing:sage: c = ATC(0) sage: c.task_start() 0 sage: c ActiveTaskCounter(value=0)
- class sage.parallel.map_reduce.RESetMPExample(maxl=9)¶
Bases:
sage.parallel.map_reduce.RESetMapReduce
An example of map reduce class.
INPUT:
maxl
– the maximum size of permutations generated (default to \(9\)).
This computes the generating series of permutations counted by their size up to size
maxl
.EXAMPLES:
sage: from sage.parallel.map_reduce import RESetMPExample sage: EX = RESetMPExample() sage: EX.run() 362880*x^9 + 40320*x^8 + 5040*x^7 + 720*x^6 + 120*x^5 + 24*x^4 + 6*x^3 + 2*x^2 + x + 1
See also
This is an example of
RESetMapReduce
- children(l)¶
Return the children of the permutation \(l\).
INPUT:
l
– a list containing a permutation
OUTPUT:
The lists with
len(l)
inserted at all possible positions intol
.EXAMPLES:
sage: from sage.parallel.map_reduce import RESetMPExample sage: RESetMPExample().children([1,0]) [[2, 1, 0], [1, 2, 0], [1, 0, 2]]
- map_function(l)¶
The monomial associated to the permutation \(l\).
INPUT:
l
– a list containing a permutation
OUTPUT:
The monomial
x^len(l)
.EXAMPLES:
sage: from sage.parallel.map_reduce import RESetMPExample sage: RESetMPExample().map_function([1,0]) x^2
- roots()¶
Return the empty permutation.
EXAMPLES:
sage: from sage.parallel.map_reduce import RESetMPExample sage: RESetMPExample().roots() [[]]
- class sage.parallel.map_reduce.RESetMapReduce(roots=None, children=None, post_process=None, map_function=None, reduce_function=None, reduce_init=None, forest=None)¶
Bases:
object
Map-Reduce on recursively enumerated sets.
INPUT:
Description of the set:
either
forest=f
– wheref
is aRecursivelyEnumeratedSet_forest>
or a triple
roots, children, post_process
as followsroots=r
– The root of the enumerationchildren=c
– a function iterating through children nodes, given a parent nodepost_process=p
– a post-processing function
The option
post_process
allows for customizing the nodes that are actually produced. Furthermore, ifpost_process(x)
returnsNone
, thenx
won’t be output at all.Description of the map/reduce operation:
map_function=f
– (default toNone
)reduce_function=red
– (default toNone
)reduce_init=init
– (default toNone
)
See also
the Map/Reduce module
for details and examples.- abort()¶
Abort the current parallel computation.
EXAMPLES:
sage: from sage.parallel.map_reduce import RESetParallelIterator sage: S = RESetParallelIterator([[]], ....: lambda l: [l + [0], l + [1]] if len(l) < 17 else []) sage: it = iter(S) sage: next(it) # random [] sage: S.abort() sage: hasattr(S, 'work_queue') False
Cleanup:
sage: S.finish()
- finish()¶
Destroy the workers and all the communication objects.
Communication statistics are gathered before destroying the workers.
See also
- get_results(timeout=None)¶
Get the results from the queue.
OUTPUT:
The reduction of the results of all the workers, that is, the result of the map/reduce computation.
EXAMPLES:
sage: from sage.parallel.map_reduce import RESetMapReduce sage: S = RESetMapReduce() sage: S.setup_workers(2) sage: for v in [1, 2, None, 3, None]: S._results.put(v) sage: S.get_results() 6
Cleanup:
sage: del S._results, S._active_tasks, S._done, S._workers
- map_function(o)¶
Return the function mapped by
self
.INPUT:
o
– a node
OUTPUT:
By default
1
.Note
This should be overloaded in applications.
EXAMPLES:
sage: from sage.parallel.map_reduce import RESetMapReduce sage: S = RESetMapReduce() sage: S.map_function(7) 1 sage: S = RESetMapReduce(map_function = lambda x: 3*x + 5) sage: S.map_function(7) 26
- post_process(a)¶
Return the image of
a
under the post-processing function forself
.INPUT:
a
– a node
With the default post-processing function, which is the identity function, this returns
a
itself.Note
This should be overloaded in applications.
EXAMPLES:
sage: from sage.parallel.map_reduce import RESetMapReduce sage: S = RESetMapReduce() sage: S.post_process(4) 4 sage: S = RESetMapReduce(post_process=lambda x: x*x) sage: S.post_process(4) 16
- print_communication_statistics(blocksize=16)¶
Print the communication statistics in a nice way.
EXAMPLES:
sage: from sage.parallel.map_reduce import RESetMPExample sage: S = RESetMPExample(maxl=6) sage: S.run() 720*x^6 + 120*x^5 + 24*x^4 + 6*x^3 + 2*x^2 + x + 1 sage: S.print_communication_statistics() # random #proc: 0 1 2 3 4 5 6 7 reqs sent: 5 2 3 11 21 19 1 0 reqs rcvs: 10 10 9 5 1 11 9 2 - thefs: 1 0 0 0 0 0 0 0 + thefs: 0 0 1 0 0 0 0 0
- random_worker()¶
Return a random worker.
OUTPUT:
A worker for
self
chosen at random.EXAMPLES:
sage: from sage.parallel.map_reduce import RESetMPExample, RESetMapReduceWorker sage: from threading import Thread sage: EX = RESetMPExample(maxl=6) sage: EX.setup_workers(2) sage: EX.random_worker() <RESetMapReduceWorker...RESetMapReduceWorker-... initial...> sage: EX.random_worker() in EX._workers True
Cleanup:
sage: del EX._results, EX._active_tasks, EX._done, EX._workers
- reduce_function(a, b)¶
Return the reducer function for
self
.INPUT:
a
,b
– two values to be reduced
OUTPUT:
By default the sum of
a
andb
.Note
This should be overloaded in applications.
EXAMPLES:
sage: from sage.parallel.map_reduce import RESetMapReduce sage: S = RESetMapReduce() sage: S.reduce_function(4, 3) 7 sage: S = RESetMapReduce(reduce_function=lambda x,y: x*y) sage: S.reduce_function(4, 3) 12
- reduce_init()¶
Return the initial element for a reduction.
Note
This should be overloaded in applications.
- roots()¶
Return the roots of
self
.OUTPUT:
An iterable of nodes.
Note
This should be overloaded in applications.
EXAMPLES:
sage: from sage.parallel.map_reduce import RESetMapReduce sage: S = RESetMapReduce(42) sage: S.roots() 42
- run(max_proc=None, reduce_locally=True, timeout=None, profile=None)¶
Run the computations.
INPUT:
max_proc
– (integer, default:None
) if given, the maximum number of worker processors to use. The actual number is also bounded by the value of the environment variableSAGE_NUM_THREADS
(the number of cores by default).reduce_locally
– SeeRESetMapReduceWorker
(default:True
)timeout
– a timeout on the computation (default:None
)profile
– directory/filename prefix for profiling, orNone
for no profiling (default:None
)
OUTPUT:
The result of the map/reduce computation or an exception
AbortError
if the computation was interrupted or timeout.EXAMPLES:
sage: from sage.parallel.map_reduce import RESetMPExample sage: EX = RESetMPExample(maxl = 8) sage: EX.run() 40320*x^8 + 5040*x^7 + 720*x^6 + 120*x^5 + 24*x^4 + 6*x^3 + 2*x^2 + x + 1
Here is an example or how to deal with timeout:
sage: from sage.parallel.map_reduce import AbortError sage: EX = RESetMPExample(maxl = 100) sage: try: ....: res = EX.run(timeout=float(0.01)) ....: except AbortError: ....: print("Computation timeout") ....: else: ....: print("Computation normally finished") ....: res Computation timeout
The following should not timeout even on a very slow machine:
sage: from sage.parallel.map_reduce import AbortError sage: EX = RESetMPExample(maxl = 8) sage: try: ....: res = EX.run(timeout=60) ....: except AbortError: ....: print("Computation Timeout") ....: else: ....: print("Computation normally finished") ....: res Computation normally finished 40320*x^8 + 5040*x^7 + 720*x^6 + 120*x^5 + 24*x^4 + 6*x^3 + 2*x^2 + x + 1
- run_serial()¶
Run the computation serially (mostly for tests).
EXAMPLES:
sage: from sage.parallel.map_reduce import RESetMPExample sage: EX = RESetMPExample(maxl = 4) sage: EX.run_serial() 24*x^4 + 6*x^3 + 2*x^2 + x + 1
- setup_workers(max_proc=None, reduce_locally=True)¶
Setup the communication channels.
INPUT:
max_proc
– (integer) an upper bound on the number of worker processes.reduce_locally
– whether the workers should reduce locally their work or sends results to the master as soon as possible. SeeRESetMapReduceWorker
for details.
- start_workers()¶
Launch the workers.
The workers should have been created using
setup_workers()
.
- class sage.parallel.map_reduce.RESetMapReduceWorker(mapred, iproc, reduce_locally)¶
Bases:
multiprocessing.context.ForkProcess
Worker for generate-map-reduce.
This shouldn’t be called directly, but instead created by
RESetMapReduce.setup_workers()
.INPUT:
mapred
– the instance ofRESetMapReduce
for which this process is working.iproc
– the id of this worker.reduce_locally
– when reducing the results. Three possible values are supported:True
– means the reducing work is done all locally, the result is only sent back at the end of the work. This ensure the lowest level of communication.False
– results are sent back after each finished branches, when the process is asking for more work.
- run()¶
The main function executed by the worker.
Calls
run_myself()
after possibly setting up parallel profiling.EXAMPLES:
sage: from sage.parallel.map_reduce import RESetMPExample, RESetMapReduceWorker sage: EX = RESetMPExample(maxl=6) sage: EX.setup_workers(1) sage: w = EX._workers[0] sage: w._todo.append(EX.roots()[0]) sage: w.run() sage: sleep(1) sage: w._todo.append(None) sage: EX.get_results() 720*x^6 + 120*x^5 + 24*x^4 + 6*x^3 + 2*x^2 + x + 1
Cleanups:
sage: del EX._results, EX._active_tasks, EX._done, EX._workers
- run_myself()¶
The main function executed by the worker.
EXAMPLES:
sage: from sage.parallel.map_reduce import RESetMPExample, RESetMapReduceWorker sage: EX = RESetMPExample(maxl=6) sage: EX.setup_workers(1) sage: w = EX._workers[0] sage: w._todo.append(EX.roots()[0]) sage: w.run_myself() sage: sleep(1) sage: w._todo.append(None) sage: EX.get_results() 720*x^6 + 120*x^5 + 24*x^4 + 6*x^3 + 2*x^2 + x + 1
Cleanups:
sage: del EX._results, EX._active_tasks, EX._done, EX._workers
- send_partial_result()¶
Send results to the MapReduce process.
Send the result stored in
self._res
to the master an reinitialize it tomaster.reduce_init
.EXAMPLES:
sage: from sage.parallel.map_reduce import RESetMPExample, RESetMapReduceWorker sage: EX = RESetMPExample(maxl=4) sage: EX.setup_workers(1) sage: w = EX._workers[0] sage: w._res = 4 sage: w.send_partial_result() sage: w._res 0 sage: EX._results.get() 4
- steal()¶
Steal some node from another worker.
OUTPUT:
A node stolen from another worker chosen at random.
EXAMPLES:
sage: from sage.parallel.map_reduce import RESetMPExample, RESetMapReduceWorker sage: from threading import Thread sage: EX = RESetMPExample(maxl=6) sage: EX.setup_workers(2) sage: w0, w1 = EX._workers sage: w0._todo.append(42) sage: thief0 = Thread(target = w0._thief, name="Thief") sage: thief0.start() # known bug (Trac #27537) sage: w1.steal() # known bug (Trac #27537) 42 sage: w0._todo # known bug (Trac #27537) deque([])
- walk_branch_locally(node)¶
Work locally.
Performs the map/reduce computation on the subtrees rooted at
node
.INPUT:
node
– the root of the subtree explored.
OUTPUT:
Nothing, the result are stored in
self._res
.This is where the actual work is performed.
EXAMPLES:
sage: from sage.parallel.map_reduce import RESetMPExample, RESetMapReduceWorker sage: EX = RESetMPExample(maxl=4) sage: w = RESetMapReduceWorker(EX, 0, True) sage: def sync(): pass sage: w.synchronize = sync sage: w._res = 0 sage: w.walk_branch_locally([]) sage: w._res x^4 + x^3 + x^2 + x + 1 sage: w.walk_branch_locally(w._todo.pop()) sage: w._res 2*x^4 + x^3 + x^2 + x + 1 sage: while True: w.walk_branch_locally(w._todo.pop()) Traceback (most recent call last): ... IndexError: pop from an empty deque sage: w._res 24*x^4 + 6*x^3 + 2*x^2 + x + 1
- class sage.parallel.map_reduce.RESetParallelIterator(roots=None, children=None, post_process=None, map_function=None, reduce_function=None, reduce_init=None, forest=None)¶
Bases:
sage.parallel.map_reduce.RESetMapReduce
A parallel iterator for recursively enumerated sets.
This demonstrates how to use
RESetMapReduce
to get an iterator on a recursively enumerated set for which the computations are done in parallel.EXAMPLES:
sage: from sage.parallel.map_reduce import RESetParallelIterator sage: S = RESetParallelIterator([[]], ....: lambda l: [l + [0], l + [1]] if len(l) < 15 else []) sage: sum(1 for _ in S) 65535
- map_function(z)¶
Return a singleton tuple.
INPUT:
z
– a node
OUTPUT:
The singleton
(z, )
.EXAMPLES:
sage: from sage.parallel.map_reduce import RESetParallelIterator sage: S = RESetParallelIterator( [[]], ....: lambda l: [l + [0], l + [1]] if len(l) < 15 else []) sage: S.map_function([1, 0]) ([1, 0],)
- reduce_init¶
alias of
builtins.tuple
- sage.parallel.map_reduce.proc_number(max_proc=None)¶
Return the number of processes to use.
INPUT:
max_proc
– an upper bound on the number of processes orNone
.
EXAMPLES:
sage: from sage.parallel.map_reduce import proc_number sage: proc_number() # random 8 sage: proc_number(max_proc=1) 1 sage: proc_number(max_proc=2) in (1, 2) True